IL_9E6Q_037
3D structure
- PDB id
- 9E6Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Pyrobaculum calidifontis 50S ribosomal subunit in complex with Dri
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.95 Å
Loop
- Sequence
- GGUAG*CGAAC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9E6Q_037 not in the Motif Atlas
- Homologous match to IL_4V9F_033
- Geometric discrepancy: 0.0876
- The information below is about IL_4V9F_033
- Detailed Annotation
- 5x5 Sarcin-Ricin with intercalated A; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_38862.4
- Basepair signature
- cWW-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
9E6Q|1|1|G|977
9E6Q|1|1|G|978
9E6Q|1|1|U|979
9E6Q|1|1|A|980
9E6Q|1|1|G|981
*
9E6Q|1|1|C|1034
9E6Q|1|1|G|1035
9E6Q|1|1|A|1036
9E6Q|1|1|A|1037
9E6Q|1|1|C|1038
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain 2
- 5S ribosomal RNA; 5S rRNA
- Chain AN
- Large ribosomal subunit protein uL16
- Chain AS
- Large ribosomal subunit protein eL21
- Chain AY
- Large ribosomal subunit protein uL30
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