IL_9E6Q_037

3D structure

PDB id

9E6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Pyrobaculum calidifontis 50S ribosomal subunit in complex with Dri

Experimental method

ELECTRON MICROSCOPY

Resolution

1.95 Å

Loop

Sequence

GGUAG*CGAAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38862.5

Basepair signature

cWW-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

9E6Q|1|1|G|977
9E6Q|1|1|G|978
9E6Q|1|1|U|979
9E6Q|1|1|A|980
9E6Q|1|1|G|981
*
9E6Q|1|1|C|1034
9E6Q|1|1|G|1035
9E6Q|1|1|A|1036
9E6Q|1|1|A|1037
9E6Q|1|1|C|1038

Current chains

Chain 1

23S rRNA

Nearby chains

Chain 2

5S ribosomal RNA; 5S rRNA

Chain AN

Large ribosomal subunit protein uL16

Chain AS

Large ribosomal subunit protein eL21

Chain AY

Large ribosomal subunit protein uL30