IL_9E6Q_043

3D structure

PDB id

9E6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Pyrobaculum calidifontis 50S ribosomal subunit in complex with Dri

Experimental method

ELECTRON MICROSCOPY

Resolution

1.95 Å

Loop

Sequence

CCCCCAAG*CG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_11411.1

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

12

Unit IDs

9E6Q|1|1|C|1124
9E6Q|1|1|C|1125
9E6Q|1|1|C|1126
9E6Q|1|1|C|1127
9E6Q|1|1|C|1128
9E6Q|1|1|A|1129
9E6Q|1|1|A|1130
9E6Q|1|1|G|1131
*
9E6Q|1|1|C|1276
9E6Q|1|1|G|1277

Current chains

Chain 1

23S rRNA

Nearby chains

Chain AG

Large ribosomal subunit protein uL13

Chain AY

Large ribosomal subunit protein uL30

Chain Aj

DJ-1/PfpI domain-containing protein