IL_9E6Q_046
3D structure
- PDB id
- 9E6Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Pyrobaculum calidifontis 50S ribosomal subunit in complex with Dri
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.95 Å
Loop
- Sequence
- UCAAUCUAAAAG*CGAAGAUGUACAGGGA
- Length
- 28 nucleotides
- Bulged bases
- 9E6Q|1|1|C|1146, 9E6Q|1|1|A|1253, 9E6Q|1|1|U|1256, 9E6Q|1|1|G|1257, 9E6Q|1|1|U|1258, 9E6Q|1|1|A|1259
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_39721.1
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
9E6Q|1|1|U|1145
9E6Q|1|1|C|1146
9E6Q|1|1|A|1147
9E6Q|1|1|A|1148
9E6Q|1|1|U|1149
9E6Q|1|1|C|1150
9E6Q|1|1|U|1151
9E6Q|1|1|A|1152
9E6Q|1|1|A|1153
9E6Q|1|1|A|1154
9E6Q|1|1|A|1155
9E6Q|1|1|G|1156
*
9E6Q|1|1|C|1250
9E6Q|1|1|G|1251
9E6Q|1|1|A|1252
9E6Q|1|1|A|1253
9E6Q|1|1|G|1254
9E6Q|1|1|A|1255
9E6Q|1|1|U|1256
9E6Q|1|1|G|1257
9E6Q|1|1|U|1258
9E6Q|1|1|A|1259
9E6Q|1|1|C|1260
9E6Q|1|1|A|1261
9E6Q|1|1|G|1262
9E6Q|1|1|G|1263
9E6Q|1|1|G|1264
9E6Q|1|1|A|1265
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain 2
- 5S ribosomal RNA; 5S rRNA
- Chain AB
- Large ribosomal subunit protein uL3
- Chain AG
- Large ribosomal subunit protein uL13
- Chain AN
- Large ribosomal subunit protein uL16
- Chain AR
- Large ribosomal subunit protein eL20
- Chain AY
- Large ribosomal subunit protein uL30
- Chain Ag
- Large ribosomal subunit protein eL40
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