IL_9E6Q_066

3D structure

PDB id

9E6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Pyrobaculum calidifontis 50S ribosomal subunit in complex with Dri

Experimental method

ELECTRON MICROSCOPY

Resolution

1.95 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

9E6Q|1|1|G|1843

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9E6Q_066 not in the Motif Atlas

Homologous match to IL_4V9F_063

Geometric discrepancy: 0.0764

The information below is about IL_4V9F_063

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_47346.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

9E6Q|1|1|C|1830
9E6Q|1|1|G|1831
9E6Q|1|1|U|1832
9E6Q|1|1|A|1833
9E6Q|1|1|A|1834
9E6Q|1|1|C|1835
*
9E6Q|1|1|G|1840
9E6Q|1|1|G|1841
9E6Q|1|1|A|1842
9E6Q|1|1|G|1843
9E6Q|1|1|A|1844
9E6Q|1|1|A|1845
9E6Q|1|1|G|1846

Current chains

Chain 1

23S rRNA

Nearby chains

Chain Ai

Large ribosomal subunit protein eL43