IL_9EBB_079

3D structure

PDB id

9EBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the MPY and ribosome-tunnel occluding hibernation factors bound to the Mycobacterium tuberculosis C- 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

AAUAUC*GGAU

Length

10 nucleotides

Bulged bases

9EBB|1|I|U|1949, 9EBB|1|I|A|1950

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9EBB_079 not in the Motif Atlas

Geometric match to IL_8B0X_115

Geometric discrepancy: 0.2568

The information below is about IL_8B0X_115

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_60418.1

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

5

Unit IDs

9EBB|1|I|A|1947
9EBB|1|I|A|1948
9EBB|1|I|U|1949
9EBB|1|I|A|1950
9EBB|1|I|U|1951
9EBB|1|I|C|1952
*
9EBB|1|I|G|1977
9EBB|1|I|G|1978
9EBB|1|I|A|1979
9EBB|1|I|U|1980

Current chains

Chain I

23S ribosomal RNA

Nearby chains