IL_9EC3_108

3D structure

PDB id

9EC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to the Mycobacterium tuberculosis C- 70S ribosome carrying fMet-tRNA(fMet) and deacylated tRNA at ribosome P and E sites.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.29 Å

Loop

Sequence

UGCAC*GAUAG

Length

10 nucleotides

Bulged bases

9EC3|1|I|C|2927, 9EC3|1|I|A|2928

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9EC3_108 not in the Motif Atlas

Homologous match to IL_7A0S_096

Geometric discrepancy: 0.2985

The information below is about IL_7A0S_096

Detailed Annotation

UAA/GAN related, with intercalation

Broad Annotation

UAA/GAN related, with intercalation

Motif group

IL_82016.1

Basepair signature

cWW-L-tHS-L-cWW

Number of instances in this motif group

4

Unit IDs

9EC3|1|I|U|2925
9EC3|1|I|G|2926
9EC3|1|I|C|2927
9EC3|1|I|A|2928
9EC3|1|I|C|2929
*
9EC3|1|I|G|2956
9EC3|1|I|A|2957
9EC3|1|I|U|2958
9EC3|1|I|A|2959
9EC3|1|I|G|2960

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain N

50S ribosomal protein L17

Chain P

50S ribosomal protein L19