IL_9ED0_012

3D structure

PDB id

9ED0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human LARP1 bound to the 40S small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GGAUAAC*GCUAA(OMU)A(OMC)

Length

15 nucleotides

Bulged bases

9ED0|1|2|OMU|172

QA status

Modified nucleotides: OMU, OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9ED0_012 not in the Motif Atlas

Geometric match to IL_8CRE_400

Geometric discrepancy: 0.0732

The information below is about IL_8CRE_400

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_24485.1

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

4

Unit IDs

9ED0|1|2|G|145
9ED0|1|2|G|146
9ED0|1|2|A|147
9ED0|1|2|U|148
9ED0|1|2|A|149
9ED0|1|2|A|150
9ED0|1|2|C|151
*
9ED0|1|2|G|167
9ED0|1|2|C|168
9ED0|1|2|U|169
9ED0|1|2|A|170
9ED0|1|2|A|171
9ED0|1|2|OMU|172
9ED0|1|2|A|173
9ED0|1|2|OMC|174

Current chains

Chain 2

rRNA

Nearby chains

Chain G

Small ribosomal subunit protein eS6

Chain Y

40S ribosomal protein S24