IL_9ED0_018

3D structure

PDB id

9ED0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human LARP1 bound to the 40S small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UAUCAA*UGACCACG

Length

14 nucleotides

Bulged bases

9ED0|1|2|U|361, 9ED0|1|2|C|399, 9ED0|1|2|C|400

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9ED0_018 not in the Motif Atlas

Geometric match to IL_8CRE_408

Geometric discrepancy: 0.0652

The information below is about IL_8CRE_408

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.4

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

6

Unit IDs

9ED0|1|2|U|359
9ED0|1|2|A|360
9ED0|1|2|U|361
9ED0|1|2|C|362
9ED0|1|2|A|363
9ED0|1|2|A|364
*
9ED0|1|2|U|396
9ED0|1|2|G|397
9ED0|1|2|A|398
9ED0|1|2|C|399
9ED0|1|2|C|400
9ED0|1|2|A|401
9ED0|1|2|C|402
9ED0|1|2|G|403

Current chains

Chain 2

rRNA

Nearby chains

Chain I

Small ribosomal subunit protein eS8

Chain L

Small ribosomal subunit protein uS17

Chain X

40S ribosomal protein S23