IL_9ED0_028

3D structure

PDB id

9ED0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human LARP1 bound to the 40S small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GAG*CGAGG(A2M)UC

Length

11 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9ED0_028 not in the Motif Atlas

Geometric match to IL_8CRE_418

Geometric discrepancy: 0.1224

The information below is about IL_8CRE_418

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_02511.1

Basepair signature

cWW-tSH-L-cWW-L-L-R-L

Number of instances in this motif group

2

Unit IDs

9ED0|1|2|G|563
9ED0|1|2|A|564
9ED0|1|2|G|565
*
9ED0|1|2|C|585
9ED0|1|2|G|586
9ED0|1|2|A|587
9ED0|1|2|G|588
9ED0|1|2|G|589
9ED0|1|2|A2M|590
9ED0|1|2|U|591
9ED0|1|2|C|592

Current chains

Chain 2

rRNA

Nearby chains

Chain J

Small ribosomal subunit protein uS4

Chain e

Small ribosomal subunit protein eS30