IL_9ED0_032
3D structure
- PDB id
- 9ED0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human LARP1 bound to the 40S small ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUUC
- Length
- 16 nucleotides
- Bulged bases
- 9ED0|1|2|A|628, 9ED0|1|2|U|630, 9ED0|1|2|U|631
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9ED0_032 not in the Motif Atlas
- Geometric match to IL_8CRE_423
- Geometric discrepancy: 0.1095
- The information below is about IL_8CRE_423
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_52042.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
9ED0|1|2|G|611
9ED0|1|2|U|612
9ED0|1|2|G|613
9ED0|1|2|C|614
9ED0|1|2|C|615
9ED0|1|2|A|616
9ED0|1|2|G|617
*
9ED0|1|2|C|624
9ED0|1|2|G|625
9ED0|1|2|G|626
9ED0|1|2|U|627
9ED0|1|2|A|628
9ED0|1|2|A|629
9ED0|1|2|U|630
9ED0|1|2|U|631
9ED0|1|2|C|632
Current chains
- Chain 2
- rRNA
Nearby chains
- Chain D
- Small ribosomal subunit protein uS3
- Chain X
- 40S ribosomal protein S23
- Chain e
- Small ribosomal subunit protein eS30
- Chain h
- La-related protein 1
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