IL_9ED0_035

3D structure

PDB id

9ED0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human LARP1 bound to the 40S small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GCU*A(A2M)C

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9ED0_035 not in the Motif Atlas

Geometric match to IL_8CRE_425

Geometric discrepancy: 0.062

The information below is about IL_8CRE_425

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

9ED0|1|2|G|673
9ED0|1|2|C|674
9ED0|1|2|U|675
*
9ED0|1|2|A|1030
9ED0|1|2|A2M|1031
9ED0|1|2|C|1032

Current chains

Chain 2

rRNA

Nearby chains

Chain N

Small ribosomal subunit protein uS15