IL_9ED0_048

3D structure

PDB id

9ED0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human LARP1 bound to the 40S small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGAAG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9ED0_048 not in the Motif Atlas

Geometric match to IL_8CRE_438

Geometric discrepancy: 0.0432

The information below is about IL_8CRE_438

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_05821.1

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

17

Unit IDs

9ED0|1|2|C|1047
9ED0|1|2|G|1048
9ED0|1|2|A|1049
9ED0|1|2|A|1050
9ED0|1|2|G|1051
*
9ED0|1|2|C|1067
9ED0|1|2|G|1068
9ED0|1|2|U|1069
9ED0|1|2|A|1070
9ED0|1|2|G|1071

Current chains

Chain 2

rRNA

Nearby chains

Chain O

Small ribosomal subunit protein uS11

Chain a

Small ribosomal subunit protein eS26