IL_9ED0_050
3D structure
- PDB id
- 9ED0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human LARP1 bound to the 40S small ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CGAU*GCAG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9ED0_050 not in the Motif Atlas
- Geometric match to IL_8CRE_440
- Geometric discrepancy: 0.0599
- The information below is about IL_8CRE_440
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 39
Unit IDs
9ED0|1|2|C|1098
9ED0|1|2|G|1099
9ED0|1|2|A|1100
9ED0|1|2|U|1101
*
9ED0|1|2|G|1131
9ED0|1|2|C|1132
9ED0|1|2|A|1133
9ED0|1|2|G|1134
Current chains
- Chain 2
- rRNA
Nearby chains
- Chain A
- Small ribosomal subunit protein uS2
- Chain B
- Small ribosomal subunit protein eS1
- Chain N
- Small ribosomal subunit protein uS15
- Chain R
- Small ribosomal subunit protein eS17
- Chain a
- Small ribosomal subunit protein eS26
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