IL_9ED0_059

3D structure

PDB id

9ED0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human LARP1 bound to the 40S small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GC(OMC)*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9ED0_059 not in the Motif Atlas

Geometric match to IL_6IA2_004

Geometric discrepancy: 0.1107

The information below is about IL_6IA2_004

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

9ED0|1|2|G|1270
9ED0|1|2|C|1271
9ED0|1|2|OMC|1272
*
9ED0|1|2|G|1510
9ED0|1|2|U|1511
9ED0|1|2|C|1512

Current chains

Chain 2

rRNA

Nearby chains

Chain K

Small ribosomal subunit protein eS10

Chain P

Small ribosomal subunit protein uS19

Chain d

Small ribosomal subunit protein uS14

Chain f

Ubiquitin-ribosomal protein eS31 fusion protein