IL_9ED0_070

3D structure

PDB id

9ED0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human LARP1 bound to the 40S small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

ACUA*U(OMU)CU

Length

8 nucleotides

Bulged bases

9ED0|1|2|C|1403, 9ED0|1|2|U|1404

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9ED0_070 not in the Motif Atlas

Geometric match to IL_8CRE_481

Geometric discrepancy: 0.1195

The information below is about IL_8CRE_481

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_78800.2

Basepair signature

cWW-cSH-L-cWW

Number of instances in this motif group

3

Unit IDs

9ED0|1|2|A|1402
9ED0|1|2|C|1403
9ED0|1|2|U|1404
9ED0|1|2|A|1405
*
9ED0|1|2|U|1441
9ED0|1|2|OMU|1442
9ED0|1|2|C|1443
9ED0|1|2|U|1444

Current chains

Chain 2

rRNA

Nearby chains

Chain D

Small ribosomal subunit protein uS3

Chain Q

Small ribosomal subunit protein uS9

Chain U

Small ribosomal subunit protein uS10