IL_9ED0_080

3D structure

PDB id

9ED0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human LARP1 bound to the 40S small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

G(OMC)CC*GUA(6MZ)C

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMC, 6MZ

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9ED0_080 not in the Motif Atlas

Geometric match to IL_5J7L_059

Geometric discrepancy: 0.0779

The information below is about IL_5J7L_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.4

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

4

Unit IDs

9ED0|1|2|G|1702
9ED0|1|2|OMC|1703
9ED0|1|2|C|1704
9ED0|1|2|C|1705
*
9ED0|1|2|G|1829
9ED0|1|2|U|1830
9ED0|1|2|A|1831
9ED0|1|2|6MZ|1832
9ED0|1|2|C|1833

Current chains

Chain 2

rRNA

Nearby chains

Chain h

La-related protein 1

Chain n

Small ribosomal subunit protein eS32