IL_9ED0_082

3D structure

PDB id

9ED0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human LARP1 bound to the 40S small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGCU*AAAAG

Length

9 nucleotides

Bulged bases

9ED0|1|2|A|1825

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9ED0_082 not in the Motif Atlas

Geometric match to IL_8CRE_401

Geometric discrepancy: 0.3265

The information below is about IL_8CRE_401

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65740.1

Basepair signature

cWW-L-R-L-R-cWW

Number of instances in this motif group

6

Unit IDs

9ED0|1|2|C|1708
9ED0|1|2|G|1709
9ED0|1|2|C|1710
9ED0|1|2|U|1711
*
9ED0|1|2|A|1822
9ED0|1|2|A|1823
9ED0|1|2|A|1824
9ED0|1|2|A|1825
9ED0|1|2|G|1826

Current chains

Chain 2

rRNA

Nearby chains

Chain X

40S ribosomal protein S23

Chain n

Small ribosomal subunit protein eS32