IL_9EHO_013
3D structure
- PDB id
- 9EHO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Octopus ribosome, hybrid 80S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGGG*CG
- Length
- 6 nucleotides
- Bulged bases
- 9EHO|1|5|G|347
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9EHO_013 not in the Motif Atlas
- Homologous match to IL_8GLP_017
- Geometric discrepancy: 0.2196
- The information below is about IL_8GLP_017
- Detailed Annotation
- Minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_41261.1
- Basepair signature
- cWW-tHS-cWW
- Number of instances in this motif group
- 44
Unit IDs
9EHO|1|5|C|346
9EHO|1|5|G|347
9EHO|1|5|G|348
9EHO|1|5|G|349
*
9EHO|1|8|C|31
9EHO|1|8|G|32
Current chains
- Chain 5
- 28S rRNA
- Chain 8
- 5.8S rRNA
Nearby chains
- Chain C
- Large ribosomal subunit protein uL4 C-terminal domain-containing protein
- Chain L
- Large ribosomal subunit protein eL13
- Chain N
- Ribosomal protein L15
- Chain j
- Ribosomal protein L37
Coloring options: