IL_9EHO_018
3D structure
- PDB id
- 9EHO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Octopus ribosome, hybrid 80S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GAC*GCAAC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9EHO_018 not in the Motif Atlas
- Geometric match to IL_1XJR_001
- Geometric discrepancy: 0.2525
- The information below is about IL_1XJR_001
- Detailed Annotation
- Isolated basepair with bulged bases
- Broad Annotation
- Isolated basepair with bulged bases
- Motif group
- IL_24466.1
- Basepair signature
- cWW-L-R-L-cWW-L
- Number of instances in this motif group
- 9
Unit IDs
9EHO|1|5|G|450
9EHO|1|5|A|451
9EHO|1|5|C|452
*
9EHO|1|5|G|1025
9EHO|1|5|C|1026
9EHO|1|5|A|1027
9EHO|1|5|A|1028
9EHO|1|5|C|1029
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain e
- 60S ribosomal protein L32
- Chain f
- Large ribosomal subunit protein eL33
Coloring options: