IL_9EHO_087
3D structure
- PDB id
- 9EHO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Octopus ribosome, hybrid 80S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGUACC*GAAGAAG
- Length
- 13 nucleotides
- Bulged bases
- 9EHO|1|5|G|2732
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9EHO_087 not in the Motif Atlas
- Homologous match to IL_9PN5_077
- Geometric discrepancy: 0.0867
- The information below is about IL_9PN5_077
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_20700.3
- Basepair signature
- cWW-tSH-L-R-tHH-tHS-cWW
- Number of instances in this motif group
- 11
Unit IDs
9EHO|1|5|C|2719
9EHO|1|5|G|2720
9EHO|1|5|U|2721
9EHO|1|5|A|2722
9EHO|1|5|C|2723
9EHO|1|5|C|2724
*
9EHO|1|5|G|2729
9EHO|1|5|A|2730
9EHO|1|5|A|2731
9EHO|1|5|G|2732
9EHO|1|5|A|2733
9EHO|1|5|A|2734
9EHO|1|5|G|2735
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain AA
- Small subunit ribosomal RNA; SSU rRNA
- Chain n
- eS32
- Chain p
- Large ribosomal subunit protein eL43
Coloring options: