IL_9EHO_126
3D structure
- PDB id
- 9EHO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Octopus ribosome, hybrid 80S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AGCAAC*GCCU
- Length
- 10 nucleotides
- Bulged bases
- 9EHO|1|5|C|4802
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9EHO_126 not in the Motif Atlas
- Homologous match to IL_8GLP_317
- Geometric discrepancy: 0.3854
- The information below is about IL_8GLP_317
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_31690.1
- Basepair signature
- cWW-L-cWW-L-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
9EHO|1|5|A|4756
9EHO|1|5|G|4757
9EHO|1|5|C|4758
9EHO|1|5|A|4759
9EHO|1|5|A|4760
9EHO|1|5|C|4761
*
9EHO|1|5|G|4801
9EHO|1|5|C|4802
9EHO|1|5|C|4803
9EHO|1|5|U|4804
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain B
- 60S ribosomal protein L3
- Chain V
- Large ribosomal subunit protein uL14
- Chain W
- Large ribosomal subunit protein eL24
Coloring options: