IL_9EHO_150

3D structure

PDB id

9EHO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Octopus ribosome, hybrid 80S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCUUAAG*CGC

Length

10 nucleotides

Bulged bases

9EHO|1|AA|U|45, 9EHO|1|AA|A|47

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9EHO_150 not in the Motif Atlas

Geometric match to IL_8GLP_191

Geometric discrepancy: 0.1057

The information below is about IL_8GLP_191

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_88082.4

Basepair signature

cWW-L-tSS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

9EHO|1|AA|G|42
9EHO|1|AA|C|43
9EHO|1|AA|U|44
9EHO|1|AA|U|45
9EHO|1|AA|A|46
9EHO|1|AA|A|47
9EHO|1|AA|G|48
*
9EHO|1|AA|C|724
9EHO|1|AA|G|725
9EHO|1|AA|C|726

Current chains

Chain AA

18S rRNA

Nearby chains

Chain YY

Small ribosomal subunit protein uS12