IL_9F1B_018

3D structure

PDB id

9F1B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ternary complex of a translating 80S ribosome, NAC and NatA/E

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

CA(PSU)U*ACCUCGGG

Length

12 nucleotides

Bulged bases

9F1B|1|A2|U|306, 9F1B|1|A2|G|308

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F1B_018 not in the Motif Atlas

Geometric match to IL_1GID_008

Geometric discrepancy: 0.3996

The information below is about IL_1GID_008

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

36

Unit IDs

9F1B|1|A2|C|216
9F1B|1|A2|A|217
9F1B|1|A2|PSU|218
9F1B|1|A2|U|219
*
9F1B|1|A2|A|303
9F1B|1|A2|C|304
9F1B|1|A2|C|305
9F1B|1|A2|U|306
9F1B|1|A2|C|307
9F1B|1|A2|G|308
9F1B|1|A2|G|309
9F1B|1|A2|G|310

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Ad

40S ribosomal protein S4

Chain Ah

40S ribosomal protein S8