3D structure

PDB id
9F1B (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mammalian ternary complex of a translating 80S ribosome, NAC and NatA/E
Experimental method
ELECTRON MICROSCOPY
Resolution
3.01 Å

Loop

Sequence
GUGCCAG*CGG(OMU)AAUUC
Length
16 nucleotides
Bulged bases
9F1B|1|A2|A|629
QA status
Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9F1B_034 not in the Motif Atlas
Homologous match to IL_8C3A_425
Geometric discrepancy: 0.1925
The information below is about IL_8C3A_425
Detailed Annotation
Kink-turn related
Broad Annotation
No text annotation
Motif group
IL_54177.2
Basepair signature
cWW-cSW-tWH-L-R-L-R-tHS-cWW
Number of instances in this motif group
5

Unit IDs

9F1B|1|A2|G|612
9F1B|1|A2|U|613
9F1B|1|A2|G|614
9F1B|1|A2|C|615
9F1B|1|A2|C|616
9F1B|1|A2|A|617
9F1B|1|A2|G|618
*
9F1B|1|A2|C|625
9F1B|1|A2|G|626
9F1B|1|A2|G|627
9F1B|1|A2|OMU|628
9F1B|1|A2|A|629
9F1B|1|A2|A|630
9F1B|1|A2|U|631
9F1B|1|A2|U|632
9F1B|1|A2|C|633

Current chains

Chain A2
18S rRNA

Nearby chains

Chain AD
40S ribosomal protein S30
Chain Ac
40S ribosomal protein S3
Chain Aw
40S ribosomal protein S23

Coloring options:


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