IL_9F1B_034

3D structure

PDB id

9F1B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ternary complex of a translating 80S ribosome, NAC and NatA/E

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

GUGCCAG*CGG(OMU)AAUUC

Length

16 nucleotides

Bulged bases

9F1B|1|A2|A|629

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F1B_034 not in the Motif Atlas

Homologous match to IL_8C3A_425

Geometric discrepancy: 0.1925

The information below is about IL_8C3A_425

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.2

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

9F1B|1|A2|G|612
9F1B|1|A2|U|613
9F1B|1|A2|G|614
9F1B|1|A2|C|615
9F1B|1|A2|C|616
9F1B|1|A2|A|617
9F1B|1|A2|G|618
*
9F1B|1|A2|C|625
9F1B|1|A2|G|626
9F1B|1|A2|G|627
9F1B|1|A2|OMU|628
9F1B|1|A2|A|629
9F1B|1|A2|A|630
9F1B|1|A2|U|631
9F1B|1|A2|U|632
9F1B|1|A2|C|633

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AD

40S ribosomal protein S30

Chain Ac

40S ribosomal protein S3

Chain Aw

40S ribosomal protein S23