IL_9F1B_062
3D structure
- PDB id
- 9F1B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian ternary complex of a translating 80S ribosome, NAC and NatA/E
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.01 Å
Loop
- Sequence
- GGAGUA(PSU)G*UGAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9F1B_062 not in the Motif Atlas
- Homologous match to IL_8C3A_446
- Geometric discrepancy: 0.0867
- The information below is about IL_8C3A_446
- Detailed Annotation
- 8x6 Sarcin-Ricin with inserted Y; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_41756.2
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
9F1B|1|A2|G|1169
9F1B|1|A2|G|1170
9F1B|1|A2|A|1171
9F1B|1|A2|G|1172
9F1B|1|A2|U|1173
9F1B|1|A2|A|1174
9F1B|1|A2|PSU|1175
9F1B|1|A2|G|1176
*
9F1B|1|A2|U|1187
9F1B|1|A2|G|1188
9F1B|1|A2|A|1189
9F1B|1|A2|A|1190
9F1B|1|A2|A|1191
9F1B|1|A2|C|1192
Current chains
- Chain A2
- 18S rRNA
Nearby chains
- Chain Aw
- 40S ribosomal protein S23
- Chain Az
- 60S ribosomal protein L41
- Chain B5
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: