IL_9F1B_330

3D structure

PDB id

9F1B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ternary complex of a translating 80S ribosome, NAC and NatA/E

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

GGAC*GUGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F1B_330 not in the Motif Atlas

Geometric match to IL_8P9A_327

Geometric discrepancy: 0.2995

The information below is about IL_8P9A_327

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

9F1B|1|B5|G|1064
9F1B|1|B5|G|1065
9F1B|1|B5|A|1066
9F1B|1|B5|C|1067
*
9F1B|1|B5|G|1076
9F1B|1|B5|U|1077
9F1B|1|B5|G|1078
9F1B|1|B5|C|1079

Current chains

Chain B5

28S rRNA

Nearby chains

Chain B

Large ribosomal subunit protein uL18

Chain B7

5S ribosomal RNA; 5S rRNA