IL_9F1B_342

3D structure

PDB id

9F1B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ternary complex of a translating 80S ribosome, NAC and NatA/E

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

GUAGU(A2M)(OMG)*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F1B_342 not in the Motif Atlas

Homologous match to IL_8P9A_289

Geometric discrepancy: 0.096

The information below is about IL_8P9A_289

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_02666.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

9F1B|1|B5|G|2201
9F1B|1|B5|U|2202
9F1B|1|B5|A|2203
9F1B|1|B5|G|2204
9F1B|1|B5|U|2205
9F1B|1|B5|A2M|2206
9F1B|1|B5|OMG|2207
*
9F1B|1|B5|C|3590
9F1B|1|B5|G|3591
9F1B|1|B5|A|3592
9F1B|1|B5|A|3593
9F1B|1|B5|A|3594
9F1B|1|B5|C|3595

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BC

60S ribosomal protein L4

Chain BP

Large ribosomal subunit protein uL22