IL_9F1C_020
3D structure
- PDB id
- 9F1C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.78 Å
Loop
- Sequence
- UAUCAA*UGACCACG
- Length
- 14 nucleotides
- Bulged bases
- 9F1C|1|A2|U|362, 9F1C|1|A2|C|400
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9F1C_020 not in the Motif Atlas
- Homologous match to IL_8C3A_410
- Geometric discrepancy: 0.1175
- The information below is about IL_8C3A_410
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_46174.1
- Basepair signature
- cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
- Number of instances in this motif group
- 6
Unit IDs
9F1C|1|A2|U|360
9F1C|1|A2|A|361
9F1C|1|A2|U|362
9F1C|1|A2|C|363
9F1C|1|A2|A|364
9F1C|1|A2|A|365
*
9F1C|1|A2|U|397
9F1C|1|A2|G|398
9F1C|1|A2|A|399
9F1C|1|A2|C|400
9F1C|1|A2|C|401
9F1C|1|A2|A|402
9F1C|1|A2|C|403
9F1C|1|A2|G|404
Current chains
- Chain A2
- 18S rRNA
Nearby chains
- Chain Ah
- 40S ribosomal protein S8
- Chain Ak
- 40S ribosomal protein S11
- Chain Aw
- 40S ribosomal protein S23
- Chain B5
- Large subunit ribosomal RNA; LSU rRNA
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