IL_9F1C_074
3D structure
- PDB id
- 9F1C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.78 Å
Loop
- Sequence
- UGG*UCUGUGA
- Length
- 10 nucleotides
- Bulged bases
- 9F1C|1|A2|U|1495, 9F1C|1|A2|G|1498
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9F1C_074 not in the Motif Atlas
- Homologous match to IL_4V88_451
- Geometric discrepancy: 0.1401
- The information below is about IL_4V88_451
- Detailed Annotation
- Minor groove platform with extra cWW
- Broad Annotation
- Minor groove platform
- Motif group
- IL_97255.1
- Basepair signature
- cWW-tSH-L-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
9F1C|1|A2|U|1334
9F1C|1|A2|G|1335
9F1C|1|A2|G|1336
*
9F1C|1|A2|U|1493
9F1C|1|A2|C|1494
9F1C|1|A2|U|1495
9F1C|1|A2|G|1496
9F1C|1|A2|U|1497
9F1C|1|A2|G|1498
9F1C|1|A2|A|1499
Current chains
- Chain A2
- 18S rRNA
Nearby chains
- Chain AG
- 40S ribosomal protein S29
- Chain Ac
- 40S ribosomal protein S3
- Chain Aj
- S10_plectin domain-containing protein
- Chain At
- Small ribosomal subunit protein uS10
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