IL_9F1D_029

3D structure

PDB id

9F1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

UCCA*UUAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F1D_029 not in the Motif Atlas

Geometric match to IL_5C5W_001

Geometric discrepancy: 0.2649

The information below is about IL_5C5W_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_77658.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

9F1D|1|A2|U|567
9F1D|1|A2|C|568
9F1D|1|A2|C|569
9F1D|1|A2|A|570
*
9F1D|1|A2|U|582
9F1D|1|A2|U|583
9F1D|1|A2|A|584
9F1D|1|A2|A|585

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Ai

40S ribosomal protein S9

Chain Ax

40S ribosomal protein S24