IL_9F1D_033

3D structure

PDB id

9F1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

GUGCCAG*CGG(OMU)AAUUC

Length

16 nucleotides

Bulged bases

9F1D|1|A2|A|629

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F1D_033 not in the Motif Atlas

Homologous match to IL_8C3A_425

Geometric discrepancy: 0.2038

The information below is about IL_8C3A_425

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.2

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

9F1D|1|A2|G|612
9F1D|1|A2|U|613
9F1D|1|A2|G|614
9F1D|1|A2|C|615
9F1D|1|A2|C|616
9F1D|1|A2|A|617
9F1D|1|A2|G|618
*
9F1D|1|A2|C|625
9F1D|1|A2|G|626
9F1D|1|A2|G|627
9F1D|1|A2|OMU|628
9F1D|1|A2|A|629
9F1D|1|A2|A|630
9F1D|1|A2|U|631
9F1D|1|A2|U|632
9F1D|1|A2|C|633

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AD

40S ribosomal protein S30

Chain Ac

40S ribosomal protein S3

Chain Aw

40S ribosomal protein S23