IL_9F1D_061

3D structure

PDB id

9F1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

GGAGUA(PSU)G*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F1D_061 not in the Motif Atlas

Homologous match to IL_8C3A_446

Geometric discrepancy: 0.086

The information below is about IL_8C3A_446

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

9F1D|1|A2|G|1169
9F1D|1|A2|G|1170
9F1D|1|A2|A|1171
9F1D|1|A2|G|1172
9F1D|1|A2|U|1173
9F1D|1|A2|A|1174
9F1D|1|A2|PSU|1175
9F1D|1|A2|G|1176
*
9F1D|1|A2|U|1187
9F1D|1|A2|G|1188
9F1D|1|A2|A|1189
9F1D|1|A2|A|1190
9F1D|1|A2|A|1191
9F1D|1|A2|C|1192

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Aw

40S ribosomal protein S23

Chain Az

60S ribosomal protein L41

Chain B5

Large subunit ribosomal RNA; LSU rRNA