IL_9F1D_074

3D structure

PDB id

9F1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

UGG*UCUGUGA

Length

10 nucleotides

Bulged bases

9F1D|1|A2|U|1495, 9F1D|1|A2|G|1498

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F1D_074 not in the Motif Atlas

Geometric match to IL_4V88_451

Geometric discrepancy: 0.1359

The information below is about IL_4V88_451

Detailed Annotation

Minor groove platform with extra cWW

Broad Annotation

Minor groove platform

Motif group

IL_97255.1

Basepair signature

cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

9F1D|1|A2|U|1334
9F1D|1|A2|G|1335
9F1D|1|A2|G|1336
*
9F1D|1|A2|U|1493
9F1D|1|A2|C|1494
9F1D|1|A2|U|1495
9F1D|1|A2|G|1496
9F1D|1|A2|U|1497
9F1D|1|A2|G|1498
9F1D|1|A2|A|1499

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AG

40S ribosomal protein S29

Chain Ac

40S ribosomal protein S3

Chain Aj

S10_plectin domain-containing protein

Chain At

40S ribosomal protein uS10