IL_9F1D_143

3D structure

PDB id

9F1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

GAAGGUGG*UGUUACAGC

Length

17 nucleotides

Bulged bases

9F1D|1|B5|G|743, 9F1D|1|B5|C|813

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F1D_143 not in the Motif Atlas

Geometric match to IL_5TBW_020

Geometric discrepancy: 0.1632

The information below is about IL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07703.1

Basepair signature

cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

9F1D|1|B5|G|740
9F1D|1|B5|A|741
9F1D|1|B5|A|742
9F1D|1|B5|G|743
9F1D|1|B5|G|744
9F1D|1|B5|U|745
9F1D|1|B5|G|746
9F1D|1|B5|G|747
*
9F1D|1|B5|U|808
9F1D|1|B5|G|809
9F1D|1|B5|U|810
9F1D|1|B5|U|811
9F1D|1|B5|A|812
9F1D|1|B5|C|813
9F1D|1|B5|A|814
9F1D|1|B5|G|815
9F1D|1|B5|C|816

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BM

60S ribosomal protein L14

Chain BS

Large ribosomal subunit protein eL20