IL_9F1D_187
3D structure
- PDB id
- 9F1D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.26 Å
Loop
- Sequence
- CUCAUCAG*CUGGAG
- Length
- 14 nucleotides
- Bulged bases
- 9F1D|1|B5|U|1869, 9F1D|1|B5|C|1870, 9F1D|1|B5|G|1994, 9F1D|1|B5|A|1996
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9F1D_187 not in the Motif Atlas
- Homologous match to IL_8C3A_054
- Geometric discrepancy: 0.2473
- The information below is about IL_8C3A_054
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_27086.1
- Basepair signature
- cWW-tWW-L-tWW-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
9F1D|1|B5|C|1865
9F1D|1|B5|U|1866
9F1D|1|B5|C|1867
9F1D|1|B5|A|1868
9F1D|1|B5|U|1869
9F1D|1|B5|C|1870
9F1D|1|B5|A|1871
9F1D|1|B5|G|1872
*
9F1D|1|B5|C|1992
9F1D|1|B5|U|1993
9F1D|1|B5|G|1994
9F1D|1|B5|G|1995
9F1D|1|B5|A|1996
9F1D|1|B5|G|1997
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain BH
- 60S ribosomal protein L9
- Chain BM
- 60S ribosomal protein L14
- Chain BO
- Large ribosomal subunit protein uL13
- Chain BS
- Large ribosomal subunit protein eL20
- Chain Bm
- Ubiquitin-ribosomal protein eL40 fusion protein
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