IL_9F1D_194

3D structure

PDB id

9F1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

CGC*GGUG

Length

7 nucleotides

Bulged bases

9F1D|1|B5|G|2186

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F1D_194 not in the Motif Atlas

Homologous match to IL_5TBW_057

Geometric discrepancy: 0.0766

The information below is about IL_5TBW_057

Detailed Annotation

Isolated cWS basepair

Broad Annotation

Isolated cWS basepair

Motif group

IL_73554.3

Basepair signature

cWW-cWS-cWW

Number of instances in this motif group

10

Unit IDs

9F1D|1|B5|C|2133
9F1D|1|B5|G|2134
9F1D|1|B5|C|2135
*
9F1D|1|B5|G|2185
9F1D|1|B5|G|2186
9F1D|1|B5|U|2187
9F1D|1|B5|G|2188

Current chains

Chain B5

28S rRNA

Nearby chains

Chain B8

5.8S ribosomal RNA; 5.8S rRNA

Chain BC

60S ribosomal protein L4

Chain Ba

60S ribosomal protein L27a

Chain Be

Ribosomal protein L32

Chain Br

60S ribosomal protein L28