IL_9F1D_207

3D structure

PDB id

9F1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

CGAUC*GGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F1D_207 not in the Motif Atlas

Homologous match to IL_5TBW_067

Geometric discrepancy: 0.2083

The information below is about IL_5TBW_067

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

9F1D|1|B5|C|2432
9F1D|1|B5|G|2433
9F1D|1|B5|A|2434
9F1D|1|B5|U|2435
9F1D|1|B5|C|2436
*
9F1D|1|B5|G|2595
9F1D|1|B5|G|2596
9F1D|1|B5|G|2597
9F1D|1|B5|A|2598
9F1D|1|B5|G|2599

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BA

Large ribosomal subunit protein uL2

Chain BZ

60S ribosomal protein L27

Chain Bg

60S ribosomal protein L34