IL_9F1D_212
3D structure
- PDB id
- 9F1D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.26 Å
Loop
- Sequence
- UGGAAUG*CGAGAGA
- Length
- 14 nucleotides
- Bulged bases
- 9F1D|1|B5|U|2504, 9F1D|1|B5|A|2517
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9F1D_212 not in the Motif Atlas
- Homologous match to IL_5TBW_073
- Geometric discrepancy: 0.1464
- The information below is about IL_5TBW_073
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_60192.2
- Basepair signature
- cWW-tSH-tSH-tSS-tHS-L-R-cWW
- Number of instances in this motif group
- 3
Unit IDs
9F1D|1|B5|U|2499
9F1D|1|B5|G|2500
9F1D|1|B5|G|2501
9F1D|1|B5|A|2502
9F1D|1|B5|A|2503
9F1D|1|B5|U|2504
9F1D|1|B5|G|2505
*
9F1D|1|B5|C|2515
9F1D|1|B5|G|2516
9F1D|1|B5|A|2517
9F1D|1|B5|G|2518
9F1D|1|B5|A|2519
9F1D|1|B5|G|2520
9F1D|1|B5|A|2521
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain BR
- Ribosomal protein L19
- Chain BZ
- 60S ribosomal protein L27
- Chain Bc
- 60S ribosomal protein L30
- Chain Bg
- 60S ribosomal protein L34
- Chain Bp
- 60S ribosomal protein L37a
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