IL_9F1D_346

3D structure

PDB id

9F1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

GUAGU(A2M)(OMG)*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F1D_346 not in the Motif Atlas

Homologous match to IL_8C3A_065

Geometric discrepancy: 0.0958

The information below is about IL_8C3A_065

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_76042.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

9F1D|1|B5|G|2201
9F1D|1|B5|U|2202
9F1D|1|B5|A|2203
9F1D|1|B5|G|2204
9F1D|1|B5|U|2205
9F1D|1|B5|A2M|2206
9F1D|1|B5|OMG|2207
*
9F1D|1|B5|C|3590
9F1D|1|B5|G|3591
9F1D|1|B5|A|3592
9F1D|1|B5|A|3593
9F1D|1|B5|A|3594
9F1D|1|B5|C|3595

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BC

60S ribosomal protein L4

Chain BP

Large ribosomal subunit protein uL22