IL_9F1D_364

3D structure

PDB id

9F1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

UGUA(PSU)(OMG)*CGAAG

Length

11 nucleotides

Bulged bases

9F1D|1|B5|U|4380, 9F1D|1|B5|PSU|4382

QA status

Modified nucleotides: PSU, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F1D_364 not in the Motif Atlas

Homologous match to IL_8C3A_127

Geometric discrepancy: 0.2786

The information below is about IL_8C3A_127

Detailed Annotation

UAA/GAN related

Broad Annotation

UAA/GAN related

Motif group

IL_17136.4

Basepair signature

cWW-R-L-tHS-tHW-cWW

Number of instances in this motif group

18

Unit IDs

9F1D|1|B5|U|4378
9F1D|1|B5|G|4379
9F1D|1|B5|U|4380
9F1D|1|B5|A|4381
9F1D|1|B5|PSU|4382
9F1D|1|B5|OMG|4383
*
9F1D|1|B5|C|4408
9F1D|1|B5|G|4409
9F1D|1|B5|A|4410
9F1D|1|B5|A|4411
9F1D|1|B5|G|4412

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BB

Ribosomal protein L3

Chain BW

Ribosomal protein L24

Chain Bd

60S ribosomal protein L31