IL_9F58_008
3D structure
- PDB id
- 9F58 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Gcn2 dimer bound to the 60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CUGAACUU*AUCAAUAAG
- Length
- 17 nucleotides
- Bulged bases
- 9F58|1|a|A|49
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9F58_008 not in the Motif Atlas
- Homologous match to IL_8CRE_005
- Geometric discrepancy: 0.0603
- The information below is about IL_8CRE_005
- Detailed Annotation
- tSH-tHW-tHH-tHS
- Broad Annotation
- tSH-tHW-tHH-tHS
- Motif group
- IL_84694.2
- Basepair signature
- cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
9F58|1|a|C|31
9F58|1|a|U|32
9F58|1|a|G|33
9F58|1|a|A|34
9F58|1|a|A|35
9F58|1|a|C|36
9F58|1|a|U|37
9F58|1|a|U|38
*
9F58|1|a|A|45
9F58|1|a|U|46
9F58|1|a|C|47
9F58|1|a|A|48
9F58|1|a|A|49
9F58|1|a|U|50
9F58|1|a|A|51
9F58|1|a|A|52
9F58|1|a|G|53
Current chains
- Chain a
- 25S rRNA
Nearby chains
- Chain L
- 60S ribosomal protein L28
- Chain V
- 60S ribosomal protein L37-A
- Chain Z
- 60S ribosomal protein L42-A
- Chain m
- 60S ribosomal protein L13-A
- Chain o
- 60S ribosomal protein L15-A
Coloring options: