IL_9F58_028
3D structure
- PDB id
- 9F58 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Gcn2 dimer bound to the 60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GAAAG*CUAGUAGC
- Length
- 13 nucleotides
- Bulged bases
- 9F58|1|a|A|933, 9F58|1|a|G|937
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9F58_028 not in the Motif Atlas
- Homologous match to IL_8P9A_256
- Geometric discrepancy: 0.0541
- The information below is about IL_8P9A_256
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_73855.1
- Basepair signature
- cWW-L-R-L-R-tWH-L-cWW
- Number of instances in this motif group
- 10
Unit IDs
9F58|1|a|G|805
9F58|1|a|A|806
9F58|1|a|A|807
9F58|1|a|A|808
9F58|1|a|G|809
*
9F58|1|a|C|931
9F58|1|a|U|932
9F58|1|a|A|933
9F58|1|a|G|934
9F58|1|a|U|935
9F58|1|a|A|936
9F58|1|a|G|937
9F58|1|a|C|938
Current chains
- Chain a
- 25S rRNA
Nearby chains
- Chain 3
- 60S ribosomal protein L4-A
- Chain L
- 60S ribosomal protein L28
- Chain V
- 60S ribosomal protein L37-A
- Chain m
- 60S ribosomal protein L13-A
- Chain o
- 60S ribosomal protein L15-A
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