IL_9F58_051
3D structure
- PDB id
- 9F58 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Gcn2 dimer bound to the 60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GACACCACAAAA*UGAAAAUGGAUGGCGC
- Length
- 28 nucleotides
- Bulged bases
- 9F58|1|a|C|1196, 9F58|1|a|A|1302, 9F58|1|a|U|1305, 9F58|1|a|G|1306
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9F58_051 not in the Motif Atlas
- Homologous match to IL_8P9A_280
- Geometric discrepancy: 0.0545
- The information below is about IL_8P9A_280
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_34501.1
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW
- Number of instances in this motif group
- 4
Unit IDs
9F58|1|a|G|1194
9F58|1|a|A|1195
9F58|1|a|C|1196
9F58|1|a|A|1197
9F58|1|a|C|1198
9F58|1|a|C|1199
9F58|1|a|A|1200
9F58|1|a|C|1201
9F58|1|a|A|1202
9F58|1|a|A|1203
9F58|1|a|A|1204
9F58|1|a|A|1205
*
9F58|1|a|U|1299
9F58|1|a|G|1300
9F58|1|a|A|1301
9F58|1|a|A|1302
9F58|1|a|A|1303
9F58|1|a|A|1304
9F58|1|a|U|1305
9F58|1|a|G|1306
9F58|1|a|G|1307
9F58|1|a|A|1308
9F58|1|a|U|1309
9F58|1|a|G|1310
9F58|1|a|G|1311
9F58|1|a|C|1312
9F58|1|a|G|1313
9F58|1|a|C|1314
Current chains
- Chain a
- 25S rRNA
Nearby chains
- Chain R
- 60S ribosomal protein L33-A
- Chain Y
- Ubiquitin-60S ribosomal protein L40
- Chain b
- 5S ribosomal RNA; 5S rRNA
- Chain d
- 60S ribosomal protein L3
- Chain g
- 60S ribosomal protein L7-A
- Chain j
- 60S ribosomal protein L10
- Chain p
- 60S ribosomal protein L16-A
Coloring options: