IL_9F58_061
3D structure
- PDB id
- 9F58 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Gcn2 dimer bound to the 60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CUAAG*CGAAAG
- Length
- 11 nucleotides
- Bulged bases
- 9F58|1|a|A|1588, 9F58|1|a|A|1589
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9F58_061 not in the Motif Atlas
- Homologous match to IL_8CRE_067
- Geometric discrepancy: 0.0782
- The information below is about IL_8CRE_067
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_38507.2
- Basepair signature
- cWW-tWH-L-tHS-cWW
- Number of instances in this motif group
- 16
Unit IDs
9F58|1|a|C|1532
9F58|1|a|U|1533
9F58|1|a|A|1534
9F58|1|a|A|1535
9F58|1|a|G|1536
*
9F58|1|a|C|1585
9F58|1|a|G|1586
9F58|1|a|A|1587
9F58|1|a|A|1588
9F58|1|a|A|1589
9F58|1|a|G|1590
Current chains
- Chain a
- 25S rRNA
Nearby chains
- Chain 4
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain S
- 60S ribosomal protein L34-A
- Chain V
- 60S ribosomal protein L37-A
- Chain X
- 60S ribosomal protein L39
- Chain c
- 60S ribosomal protein L2-A
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