IL_9F58_076

3D structure

PDB id

9F58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Gcn2 dimer bound to the 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAAGUCGG*CUGUC

Length

14 nucleotides

Bulged bases

9F58|1|a|G|2335

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F58_076 not in the Motif Atlas

Geometric match to IL_8P9A_305

Geometric discrepancy: 0.0599

The information below is about IL_8P9A_305

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80252.1

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

10

Unit IDs

9F58|1|a|G|1898
9F58|1|a|G|1899
9F58|1|a|A|1900
9F58|1|a|A|1901
9F58|1|a|G|1902
9F58|1|a|U|1903
9F58|1|a|C|1904
9F58|1|a|G|1905
9F58|1|a|G|1906
*
9F58|1|a|C|2333
9F58|1|a|U|2334
9F58|1|a|G|2335
9F58|1|a|U|2336
9F58|1|a|C|2337

Current chains

Chain a

25S rRNA

Nearby chains

Chain d

60S ribosomal protein L3

Chain w

60S ribosomal protein L23-A