IL_9F58_108

3D structure

PDB id

9F58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Gcn2 dimer bound to the 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAU*GCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F58_108 not in the Motif Atlas

Geometric match to IL_8P9A_337

Geometric discrepancy: 0.0475

The information below is about IL_8P9A_337

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_01003.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

174

Unit IDs

9F58|1|a|C|2889
9F58|1|a|A|2890
9F58|1|a|U|2891
*
9F58|1|a|G|2912
9F58|1|a|C|2913
9F58|1|a|G|2914

Current chains

Chain a

25S rRNA

Nearby chains

Chain d

60S ribosomal protein L3

Chain w

60S ribosomal protein L23-A