IL_9F58_111

3D structure

PDB id

9F58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Gcn2 dimer bound to the 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAU*ACC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F58_111 not in the Motif Atlas

Homologous match to IL_8P9A_340

Geometric discrepancy: 0.0834

The information below is about IL_8P9A_340

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

9F58|1|a|G|2918
9F58|1|a|A|2919
9F58|1|a|U|2920
*
9F58|1|a|A|2926
9F58|1|a|C|2927
9F58|1|a|C|2928

Current chains

Chain a

25S rRNA

Nearby chains

Chain d

60S ribosomal protein L3

Chain w

60S ribosomal protein L23-A