IL_9F58_123
3D structure
- PDB id
- 9F58 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Gcn2 dimer bound to the 60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UACGAAUAAG*CGCUGAA
- Length
- 17 nucleotides
- Bulged bases
- 9F58|1|a|A|3180, 9F58|1|a|A|3186, 9F58|1|a|C|3206, 9F58|1|a|U|3207, 9F58|1|a|A|3209
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9F58_123 not in the Motif Atlas
- Homologous match to IL_8P9A_352
- Geometric discrepancy: 0.0729
- The information below is about IL_8P9A_352
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_28855.1
- Basepair signature
- cWW-L-R-L-cWW-L-cWW-L-L
- Number of instances in this motif group
- 2
Unit IDs
9F58|1|a|U|3179
9F58|1|a|A|3180
9F58|1|a|C|3181
9F58|1|a|G|3182
9F58|1|a|A|3183
9F58|1|a|A|3184
9F58|1|a|U|3185
9F58|1|a|A|3186
9F58|1|a|A|3187
9F58|1|a|G|3188
*
9F58|1|a|C|3204
9F58|1|a|G|3205
9F58|1|a|C|3206
9F58|1|a|U|3207
9F58|1|a|G|3208
9F58|1|a|A|3209
9F58|1|a|A|3210
Current chains
- Chain a
- 25S rRNA
Nearby chains
- Chain R
- 60S ribosomal protein L33-A
- Chain f
- 60S ribosomal protein L6-A
- Chain i
- 60S ribosomal protein L9-A
- Chain n
- 60S ribosomal protein L14-A
- Chain p
- 60S ribosomal protein L16-A
- Chain t
- 60S ribosomal protein L20-A
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