IL_9F58_134

3D structure

PDB id

9F58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Gcn2 dimer bound to the 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGAG*CGAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F58_134 not in the Motif Atlas

Homologous match to IL_8P9A_362

Geometric discrepancy: 0.1168

The information below is about IL_8P9A_362

Detailed Annotation

Double sheared; A in syn

Broad Annotation

Double sheared

Motif group

IL_58355.2

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

43

Unit IDs

9F58|1|a|A|3342
9F58|1|a|G|3343
9F58|1|a|A|3344
9F58|1|a|G|3345
*
9F58|1|a|C|3360
9F58|1|a|G|3361
9F58|1|a|A|3362
9F58|1|a|U|3363

Current chains

Chain a

25S rRNA

Nearby chains

Chain s

60S ribosomal protein L19-A

Chain v

60S ribosomal protein L22-A

Chain y

60S ribosomal protein L24-A