IL_9F9S_001

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CC*GCG

Length

5 nucleotides

Bulged bases

9F9S|1|L2|C|151

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F9S_001 not in the Motif Atlas

Homologous match to IL_8C3A_002

Geometric discrepancy: 0.0796

The information below is about IL_8C3A_002

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.13

Basepair signature

cWW-L-cWW

Number of instances in this motif group

40

Unit IDs

9F9S|1|L1|C|7
9F9S|1|L1|C|8
*
9F9S|1|L2|G|150
9F9S|1|L2|C|151
9F9S|1|L2|G|152

Current chains

Chain L1

Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1)

Chain L2

Saccharomyces cerevisiae S288C 5.8S ribosomal RNA

Nearby chains

Chain LC

60S ribosomal protein L8-A

Chain LI

60S ribosomal protein L15-A

Chain Lt

60S ribosomal protein L25